Package: ordinalbayes 0.1.1
ordinalbayes: Bayesian Ordinal Regression for High-Dimensional Data
Provides a function for fitting various penalized Bayesian cumulative link ordinal response models when the number of parameters exceeds the sample size. These models have been described in Zhang and Archer (2021) <doi:10.1186/s12859-021-04432-w>.
Authors:
ordinalbayes_0.1.1.tar.gz
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ordinalbayes.pdf |ordinalbayes.html✨
ordinalbayes/json (API)
| # Install 'ordinalbayes' in R: |
| install.packages('ordinalbayes', repos = c('https://kelliejarcher.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kelliejarcher/ordinalbayes/issues
- cesc - Data Frame of Smaller Subset of The Cancer Genome Atlas Cervical Cancer HTSeq Data.
- finalSet - Subset of The Cancer Genome Atlas Cervical Cancer HTSeq Data.
- reducedSet - Smaller Subset of The Cancer Genome Atlas Cervical Cancer HTSeq Data.
Last updated 2 years agofrom:aed233a760. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 09 2024 |
| R-4.5-win | NOTE | Sep 09 2024 |
| R-4.5-linux | NOTE | Sep 09 2024 |
| R-4.4-win | NOTE | Sep 09 2024 |
| R-4.4-mac | NOTE | Sep 09 2024 |
| R-4.3-win | NOTE | Sep 09 2024 |
| R-4.3-mac | NOTE | Sep 09 2024 |
Exports:ordinalbayes
Dependencies:abindaskpassbackportsbase64encBHBiobaseBiocGenericsBiocParallelbootbrewbriobslibcachemcallrcheckmateclicliprcodacodetoolscolorspacecommonmarkcpp11crayoncredentialscurldcloneDelayedArraydescDESeq2devtoolsdiffobjdigestdistributionaldownlitellipsisevaluatefansifarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgertggplot2ghgitcredsgluegridExtragtablehighrhtmltoolshtmlwidgetshttpuvhttrhttr2iniinlineIRangesisobandjquerylibjsonliteknitrlabelinglambda.rlaterlatticelifecyclelocfitloomagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUImunsellnlmenumDerivopensslpillarpkgbuildpkgconfigpkgdownpkgloadposteriorpraiseprettyunitsprocessxprofvispromisespspurrrQuickJSRR2OpenBUGSR6raggrappdirsrcmdcheckRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelrematch2remotesrjagsrlangrmarkdownroxygen2rprojrootrstanrstudioapirunjagsrversionsS4ArraysS4VectorssassscalessessioninfoshinysnowsourcetoolsSparseArrayStanHeadersstringistringrSummarizedExperimentsyssystemfontstensorAtestthattextshapingtibbletinytexUCSC.utilsurlcheckerusethisutf8vctrsviridisLitewaldowhiskerwithrxfunxml2xopenxtableXVectoryamlzipzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Data Frame of Smaller Subset of The Cancer Genome Atlas Cervical Cancer HTSeq Data. | cesc |
| Extract Model Coefficients | coef.ordinalbayes |
| Subset of The Cancer Genome Atlas Cervical Cancer HTSeq Data. | finalSet |
| Ordinal Bayesian Regression Models for High-Dimensional Data | ordinalbayes |
| Trace Plot and/or Density Plot of MCMC Output. | plot.ordinalbayes |
| Predicted Probabilities and Class for an Ordinal Bayes Fit. | fitted.ordinalbayes predict.ordinalbayes |
| Print MCMC Summary Statistics | print.ordinalbayes |
| Smaller Subset of The Cancer Genome Atlas Cervical Cancer HTSeq Data. | reducedSet |
| Summarize an Ordinal Bayes Object. | summary.ordinalbayes |
